All publications 2018-2022 (alphabetical)

Aerts H, Schirner M, Dhollander T, Jeurissen B, Achten E, Van Roost D, Ritter P, Marinazzo D (2020) Modeling brain dynamics after tumor resection using The Virtual Brain. NeuroImage. Link

Alevi DKempter RSprekeler H (2019) From episodic to semantic memory: A computational model. Proceedings CCNeuro Berlin 2019. Link

Aliatakis N, Schneider J, Spors B, Mohr N, Lebek S, Seidel U, Trojan CK, Kaindl AM (2020) Age-specific occurrence of pathological fractures in patients with spina bifida. Eur J Pediatr. Link

Antonenko A, Grittner U, Saturnino G, Nierhaus T, Thielscher A, Flöel A (2021) Inter-individual and age-dependent variability in simulated electric fields induced by conventional transcranial electrical stimulation. NeuroImage. Link

Aru J, Suzuki M, Larkum ME (2020) Cellular mechanisms of conscious processing. Trends Cogn Sci. Link

Bach DR, Hoffmann M, Finke C, Hurlemann R, Ploner CJ (2019) Disentangling hippocampal and amygdala contribution to human anxiety-like behaviour. J Neurosci. Link

Battaglia D, Boudou T, Hansen ECA, Lombardo D, Chettouf S, Daffertshofer A, McIntosh AR, Zimmermann J, Ritter P, Jirsa V (2020) Dynamic functional connectivity between order and randomness and its evolution across the human adult lifespan. NeuroImage. Link

Becker LL, Dafsari HS, Schallner J, Abdin D, Seifert M, Petit F, Smol T, Bok L, Rodan L, Krapels I, Spranger S, Weschke B, Johnson K, Straub V, Kaindl AM, Donato N, von der Hagen M, Cirak S (2020) The clinical-phenotype continuum in DYNC1H1-related disorders—genomic profiling and proposal for a novel classification.  J Hum Genet. Link

Beed P, Filippo R, Holman C, Johenning FW, Leibold C, Caputi A, Monyer H, Schmitz D (2020) Layer 3 pyramidal cells in the medial entorhinal cortex orchestrate up-down states and entrain the deep layers differentially. Cell Reports. Link

Benichov JI, Vallentin D (2020). Inhibition within a premotor circuit controls the timing of vocal turn-taking in zebra finches. Nat Commun. Link

Beyer F, Prehn K, Wüsten KA, Villringer A, Ordemann J, Flöel A, Witte AV (2020) Weight loss reduces head motion: re-visiting a major confound in neuroimaging. Hum Brain Mapping. Link

Bhukel A, Beuschel CB, Maglione M, Lehmann M, Juhász G, Madeo F, Sigrist SJ (2019) Autophagy within the mushroom body protects from synapse aging in a non-cell autonomous manner. Nat Commun. Link

Caglayan A, Stumpenhorst K, Winter Y (2021) Learning set formation and reversal learning in mice during high-throughput home-cage-based olfactory discrimination. Front Behav Neurosci. Link

Cakan C, Dimulescu C, Khakimova L, Obst D, Flöel A, Obermayer K (2020) Criticality and the role of the connectome in shaping slow oscillations in the brain during deep sleep. arXiv. Link

Cakan C, Jajcay N, Obermayer K (2021) neurolib: a simulation framework for whole-brain neural mass modeling. bioRxiv. Link

Cakan C, Obermayer K (2020) Biophysically grounded mean-field models of neural populations under electrical stimulation. PLoS Comput Biol. Link

Chettouf S, Rueda-Delgado LM, de Vries R, Ritter P, Daffertshofer A (2020) Are unimanual movements bilateral? Neurosci & Biobehav Rev. Link

Chettouf S, Triebkorn P, Daffertshofer A, Ritter P (2021) Effect of aging-related network changes on unimanual sensorimotor learning – a simultaneous EEG-fMRI study. bioRxiv.

Chouzouris T, Roth N, Cakan C, Obermayer K (2021) Applications of optimal nonlinear control to a whole-brain network of FitzHugh-Nagumo oscillators. Phys Rev E. Link

Clemens AM, Wang H, Brecht M (2020) The lateral septum mediates kinship behavior in the rat. Nat Commun. Link

D’Albis TKempter R (2020) Recurrent amplification of grid-cell activity. Hippocampus. Link

de Filippo R, Rost B, Stumpf A, Cooper C, Tukker J, Harms C, Beed P, Schmitz D (2021) Somatostatin interneurons activated by 5-HT2A receptor suppress slow oscillations in medial entorhinal cortex. eLife. Link

Dominiak SE, Nashaat MA, Sehara K, Oraby H, Larkum ME, Sachdev RNS (2019) Whisking asymmetry signals motor preparation and the behavioral state of mice. J Neurosci. Link

Doron G†, Shin JN†, Takahashi T, Drüke M, Bocklisch C, Skenderi S, de Mont L, Toumazou M, Ledderose J, Brecht M, Naud R, Larkum ME (equal contribution) (2020) Perirhinal input to neocortical layer 1 controls learning. Science. Link

Düzel E, Acosta-Cabronero J, Berron D, Biessels GJ, Björkman-Burtscher I, Bottlaender M et al. (2019) European Ultrahigh-field Imaging Network for Neurodegenerative Diseases (EUFIND): Working Group Summaries for European Joint Programming for Neurodegenerative Research (JPND), in Alzheimer’s & Dementia. Link

Evangelista R, Cano G, Cooper C, Schmitz D, Maier N, Kempter R (2020) Generation of sharp wave-ripple events by disinhibition. J Neurosci. Link

Gidon A, Zolnik TA, Fidzinski P, Bolduan F, Papoutsi A, Poirazi P, Holtkamp M, Vida I, Larkum ME(2020). Dendritic action potentials and computation in human layer 2/3 cortical neurons. Science. Link

Heine J, Prüß H, Scheel M, Brandt AU, Gold SM, Bartsch T, Paul F, Finke C (2020) Transdiagnostic hippocampal damage patterns in neuroimmunological disorders. NeuroImage: Clinical. Link

Holzbecher A, Kempter R (2018) Interneuronal gap junctions increase synchrony and robustness of hippocampal ripple oscillations. Eur J Neurosci. Link

Huang S, Piao C, Beuschel CB, Götz T, Sigrist SJ (2020). Presynaptic activity zone plasticity encodes sleep need in Drosophila. Curr Biol. Link

Huang S, Sigrist SJ (2021) Presynaptic and postsynaptic long-term plasticity in sleep homeostasis. Curr Opin NeurobiolLink

Iggena D, Maier PM, Häussler SM, Menk M, Olze H, Larkum ME, Finke C, Ploner CJ (2021) Post-encoding modulation of spatial memory by a GABAA-agonist. bioRxiv. Link

Jajcay N, Cakan C, Obermayer K (2021) Cross-frequency slow oscillation–spindle coupling in a biophysically realistic thalamocortical neural mass model. bioRxiv. Link

Jouhanneau JS, Poulet JFA (2019) Multiple two-photon targeted whole-cell patch-clamp recordings from monosynaptically connected neurons in vivoFront Synaptic Neurosci. Link 

Klein PC, Ettinger U, Schirner M, Ritter P, Rujescu D, Falkai P, Koutsouleris N, Kambeitz-Ilankovic L, Kambeitz J (2020) Brain network simulations indicate effects of neuregulin-1 genotype on excitation-inhibition balance in cortical dynamics. Cerebral Cortex. Link

Kunz L, Brandt A, Reinacher PC, Staresina BP, Reifenstein ET, Weidemann CT, Nora A. Herweg NA, Patel A, Tsitsiklis M, Kempter R, Kahana MJ, Schulze-Bonhage A, Jacobs J (2021) A neural code for egocentric spatial maps in the human medial temporal lobe. Neuron. Link

Ladenbauer J, Ladenbauer J, Külzow N, Flöel A (2021) Memory-relevant nap sleep physiology in healthy and pathological aging. Sleep. Link

Liang YT (2019) (PhD AG Sigrist) Emerging concepts and functions of autophagy as a regulator of synaptic components and plasticity. Cells. Link

Liang YT, Piao C, Beuschel CB, Toppe D, Kollipara L, Bogdanow B, Maglione M, Lützkendorf J, Kit See JC, Huang S, Conrad TOF, Kintscher U, Madeo F, Liu F,  Sickmann A, Sigrist SJ (2021) eIF5A-hypusination, boosted by dietary spermidine, protects from premature brain aging and mitochondrial dysfunction. Cell Reports. Link

Lucchese G, Flöel A, Stahl B (2019) Cross-reactivity as a mechanism linking infections in stroke. Front Neurol. Link

Liu KY, Kievit RA, Tsvetanov KA, Betts MJ, Düzel E, Rowe JB, CAN-Cam, Howard R, Hämmerer D (2020) Noradrenergic-dependent functions are associated with age-related locus coeruleus signal intensity differences. Nat Commun. Link

Mahn M, Sinik IS, Patil P, Pulin M, Bitton E, Karalis N, Bruentgens F, Palgi S, Gat A, Dine J, Wietek J, Davidi I, Levy R, Litvin A, Zhou F, Sauter K, Soba P, Schmitz D, Lüthi A, Rost BR, Wiegert JS, Yizhar O (2021) Efficient optogenetic silencing of neurotransmitter release with a mosquito rhodopsin. Neuron. Link

Mak CCY, Doherty D, Lin AE, Vegas N, Cho MT, Viot G, Dimartino C, Weisfeld-Adams J, Lessel D, Joss S, Li C, Gonzaga-Jauregui C, Zarate YA, Ehmke N, Horn D, Troyer C, Kant SG, Lee Y, Ishak GE, Leung G, Pritchard AB, Yang S, Bend EG, Filippini F, Roadhouse C, Lebrun O, Mehaffey MG, Martin P-M, Apple B, Millan F, Puk O, Hoffer MJV, Henderson JB, McGowan R, Wentzensen IM, Pei S, Zahir FR, Yu M, Gibson WT, Seman A, Steeves M, Murrell JR, Luettgen S, Francisco E, Strom TM, Amlie-Wolf L, Kaindl AM et al. (2020) MN1 C-terminal truncation syndrome is a novel neurodevelopmental and craniofacial disorder with partial rhombencephalosynapsis. Brain. Link

Michalikova M, Remme MWH, Kempter R (2018) Extracellular waveforms reveal an axonal origin of spikelets in pyramidal neurons. J Neurophysiol. Link

Michalikova M, Remme MWH, Schmitz D, Schreiber S, Kempter R (2020) Spikelets in pyramidal neurons: generating mechanisms, distinguishing properties, and functional implications. Rev Neurosci. Link

Moon DU, Esfahani-Bayerl N, Finke C, Salchow DJ, Menk M, Bayerl M, Kempter RPloner CJ(2020) Propofol modulates early memory consolidation in humans. eNeuro. Link

Nitzan N, McKenzie S, Beed P, English DF, Oldani S, Tukker JJ, Buzsáki G, Schmitz D (2020) Propagation of hippocampal ripples to the neocortex by way of a subiculum-retrosplenial pathway. Nat Commun. Link

Nolden S, Brod G, Meyer AK, Fandakova Y, Shing YL (2021) Neural correlates of successful memory encoding in kindergarten and early elementary school children: Longitudinal trends and effects of schooling. Cerebral Cortex. Link

Oldani S, Moreno-Velasquez L, Stumpf A, Rosenmund C, Schmitz D, Rost BR (2020) SynaptoPAC, an Optogenetic tool for induction of presynaptic plasticity. J NeurochemLink

Orlando M, Dvorzhak A, Bruentgens F, Maglione M, Rost BR, Sigrist SJ, Breustedt J, Schmitz D (2021) Recruitment of release sites underlies chemical presynaptic potentiation at hippocampal mossy fiber boutons. PLoS Biol. Link

Overfeld J, Entringer S, Rasmussen JM, Heim CM, Styner MA, Gilmore JH, Wadhwa PD, Buss C (2020) Neonatal hippocampal volume moderates the effects of early postnatal enrichment on cognitive development. Dev Cogn Neurosci. Link

Pajkert A, Ploner CJ, Lehmann T-N, Witte VA, Oltmanns F, Sommer W, Holtkamp M, Heekeren HR, Finke C (2020) Early volumetric changes of hippocampus and medial prefrontal cortex following medial temporal lobe resection. Eur J Neurosci. Link

Palesi F, Lorenzi RM, Casellato C, Ritter P, Jirsa V, Gandini Wheeler-Kingshott CAM, D’Angelo E (2020) The importance of cerebellar connectivity on simulated brain dynamics. Front Cell Neurosci. Link

Papadopoulos IN, Jouhanneau J-S, Takahashi N, Kaplan D, Larkum M, Poulet J, Judkewitz B (2020) Dynamic conjugate F-SHARP microscopy. Light Sci Appl. Link

Paricio-Montesinos R, Schwaller F, Udhayachandran A, Rau F, Walcher J, Evangelista R, Vriens J, Voets T, Poulet JFA, Lewin GR (2020) The sensory coding of warm perception. Neuron.  Link

Poldrack RA, Feingold F, Frank MJ, Gleeson P, de Hollander G, Huys QJM, Love BC, Markiewicz CJ, Moran R, Ritter P, Rogers TT, Turner BM, Yarkoni T, Zhan M, Cohen JD (2019) The importance of standards for sharing of computational models and data. Comput Brain & Behav. Link

Pooryasin A, Maglione M, Schubert M, Matkovic-Rachid T, Hasheminasab SM, Pech U, Fiala A, Mielke T, Sigrist SJ (2021) Unc13B contribute to the decoding of dictinct sensory information in drosophila. Nat Commun. Link

Quade B, Camacho M, Zhao X, Orlando M, Trimbuch T, Xu J, Li W, Nicastro D, Rosenmund C, Rizo J (2019) Membrane bridging by Munc13-1 is crucial for neurotransmitter release. eLife. Link

Raccuglia D, Huang S, Ender A, Heim MM, Laber D, Suárez-Grimalt R, Liotta A, Sigrist SJ, Geiger JRP, Owald D (2019) Network-specific synchronization of electrical slow-wave oscillations regulates sleep drive in DrosophilaCurr Biol. Link

Raffington L, Falck J, Heim C, Mather M, Shing YL (2020) Effects of stress on 6- and 7-year-old children’s emotional memory differs by gender. J Exp Child Psychol. Link

Reifenstein E, Khalid IB, Kempter R (2021) Synaptic learning rules for sequence learning. eLife. Link

Raile V, Herz NA, Promnitz G, Schneider J, Tietze A, Kaindl AM (2020) Clinical outcome of children with corpus callosum agenesis. Pediatric Neurology. Link

Rao RP, von Heimendahl M, Bahr V, Brecht M (2019) Neuronal responses to conspecifics in the ventral CA1. Cell Rep. Link

Rodríguez de los Santos M, Rivalan M, David FS, Stumpf A, Pitsch J, Tsortouktzidis D, Moreno Velasquez L, Voigt A, Schilling K, Mattei D, Long M, Vogt G, Knaus A, Fischer-Zirnsak B, Wittler L, Timmermann B,  Robinson PN, Horn D, Mundlos S, Kornak U, Becker AJ, Schmitz D, Winter Y and Krawitz PM (2021) A CRISPR-Cas9–engineered mouse model for GPI-anchor deficiency mirrors human phenotypes and exhibits hippocampal synaptic dysfunctions. PNAS. Link

Sehara K, Bahr V, Mitchinson B, Pearson MJ, Larkum ME, Sachdev RNS (2019) Fast, flexible closed-loop feedback: Tracking movement in “real-millisecond time”. eNeuro. Link

Scheibe F, Neumann WJ, Lange C, Scheel M, Furth C, Köhnlein M, Mergenthaler P, Schultze‐Amberger J, Triebkorn PRitter P, Kühn AA, Meisel A (2020) Movement disorders after hypoxic brain injury following cardiac arrest in adults. Eur J Neurol. Link

Schommartz I, Lembcke PF, Schuetz H, de Chamorro NW, Bauer M, Kaindl AM, Buss C, Shing YL (2021) From learning to remembering: How memory consolidation differs in term and preterm born children from young adults. bioRxiv. Link

Schneider J, Mohr N, Aliatakis N, Seidel U, John R, Promnitz G, Spors B, Kaindl AM (2021) Brain malformations and cognitive performance in spina bifida. Devel Med Child Neurol. Link

Schroeder P, Rivalan M, Zaqout S, Krüger C, Schüler J, Long M, Meisel A, Winter YKaindl AM, Lehnardt S (2021) Abnormal brain structure and behavior in MyD88-deficient mice. Brain Behav Immun. Link

Schwaller F, Bégay V, García-García G, Taberner FJ, Moshourab R, McDonald B, Docter T, Kühnemund J, Ojeda-Alonso J, Paricio-Montesinos R, Lechner SG, Poulet JFA, Millan JM, Lewin GR (2020) USH2A is a Meissner’s corpuscle protein necessary for normal vibration sensing in mice and humans. Nat Neurosci. Link

Shen K, Bezgin G, Schirner M, Ritter P, Everling S, McIntosh AR (2019) A macaque connectome for large-scale network simulations in The Virtual Brain. Sci Data. Link

Shing YLFinke C, Hoffmann M, Pajkert A, Heekeren HR, Ploner CJ (2019) Integrating across memory episodes: developmental trends. PLoS One. Link

Sigl-Glöckner J, Maier E, Takahashi N, Sachdev R, Larkum MBrecht M (2019) Effects of sexual experience and puberty on mouse genital cortex revealed by chronic imaging. Curr Biol. Link

Stefanovski L, Meier JM, Pai R, Triebkorn P, Lett T, Martin L, Bülau K, Hofmann-Apitius M, Solodkin A, McIntosh A, Ritter P (2020) From genes to network models of Alzheimer’s disease: Biological framework for multi-scale brain simulation with The Virtual Brain. PsyArXiv. Link

Stefanovski L, Triebkorn P, Spiegler A, Diaz-Cortes, M-A, Solodkin A, Jirsa V, McIntosh AR, Ritter P (2019) Linking molecular pathways and large-scale modeling to assess candidate disease mechanisms and pharmacodynamics in Alzheimer’s disease. Front Comput Neurosci. Link

Suzuki M, Larkum ME (2020) General anesthesia decouples cortical pyramidal neurons. Cell. Link

Swaminathan A, Wichert I, Schmitz D, Maier N (2018) Involvement of mossy cells in sharp wave-ripple activity in vitro. Cell Rep. Link

Takahashi N, Moberg S, Zolnik TA, Catanese J, Sachdev RNS, Larkum ME, Jaeger D (2021) Thalamic input to motor cortex facilitates goal-directed action initiation. Curr Biol. Link

Takahashi N, Ebner C, Sigl-Glöckner J, Moberg S, Nierwetberg S, Larkum ME (2020) Active dendritic currents gate descending cortical outputs in perception. Nat Neurosci. Link

Tantirigama MLS, Zolnik T, Judkewitz, Larkum ME, Sachdev RNS (2020) Perspective on the multiple pathways to changing brain states. Front Syst Neurosci. Link

Thams F, Kuzmina A, Backhaus M, Shu-Chen Li, Grittner U, Antonenko D, Flöel A (2020) Cognitive training and brain stimulation in prodromal Alzheimer’s disease (AD-Stim)—study protocol for a doubleblind randomized controlled phase IIb (monocenter) trial. Alzheimer’s Res Ther. Link

Thurm F, Li S-C, Hämmerer D (2020). Maturation- and aging-related differences in electrophysiological correlates of error detection and error awareness. Neuropsychologia. Link

Triebkorn P, Zimmermann J, Stefanovski L, Roy D, Solodkin A, Jirsa V, Deco G, Breakspear M, McIntosh AR, Ritter P (2020) Identifying optimal working points of individual Virtual Brains: A large-scale brain network modelling study. bioRxiv. Link

Tukker JJ, Beed P, Schmitz D, Larkum ME, Sachdev RNS (2020) Up and down states across somatosensory, entorhinal, and hippocampal cortices. Front Syst Neurosci. Link

Tukker JJ, Beed P, Brecht M, Kempter K, Moser EI and Schmitz D (2021) Microcircuits for spatial coding in the medial entorhinal cortex. Physiol Rev. Link

Vafidis P, Owald D,D’Albis T, Kempter R(2021) Learning accurate path integration in a ring attractor model of the head direction system. bioRxiv. Link

Valova V, Kochan A, John R, Prager C, Schneider J, Kaindl AM (2020) Early onset, long illness duration, epilepsy type, and polypharmacy have an adverse affect on psychosocial outcome in children with epilepsy. Neuropediatrics. Link

Vasilevsky NA, Hosseini M, Teplitzky S, Ilik V, Mohammadi E, Schneider J, Kern B, Colomb J, Edmunds SC, Gutzman K, Himmelstein DS, White M, Smith B, O’Keefe L, Haendel M, Holmes KL (2020) Is authorship sufficient for today’s collaborative research? A call for contributor roles. Account Res. Link

Vierock J, Rodriguez-Rozada S, Pieper F, Dieter A, Sims R, Tenedini F, Bergs A, Bendifallah I, Zhou F, Zeitzschel N, Ahlbeck J, Augustin S, Papagiakoumou E, Sauter K, Soba P, Gottschalk A, Engel AK, Emiliani V, Hegemann P, Wiegert JS (2021) BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons. Nat Commun. Link

von der Hagen M, Becker LL, Wienker TF, Smitka M, Musante L, Ropers HH, Huebner A, Hu H, Kaindl AM (2019) Just expect it: Compound heterozygous variants of PIMT1 in a consanguineous family – the role of next generation sequencing in neuromuscular disorders. Neuropediatrics. Link

von Schwanenflug N, Krohn S, Heine J, Paul F, Pruess H, Finke C (2020) State-dependent signatures of anti-NMDA-receptor encephalitis: a dynamic functional connectivity study. bioRxiv. Link

Woitkuhn J, Ender A, Beuschel CB, Maglione M, Matkovic-Rachid T, Huang S, Lehmann M, Geiger JRP, Sigrist SJ (2020). The Unc13A isoform is important for phasic release and olfactory memory formation at mushroom body synapses. J Neurogenet. Link

Zaqout S, Ravindran E, Stoltenburg-Didinger G, Kaindl AM (2020) Congenital microcephaly-linked CDK5RAP2 affects eye development. Ann Hum Genet. Link

Zolnik TA, Ledderose J, Toumazou M, Trimbuch T, Oram T, Rosenmund C, Eickholt BJ, Sachdev RNS, Larkum ME (2020) Layer 6b is driven by intracortical long-range projection neurons. Cell Reports. Link


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